PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof016658

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 183aa MW: 20071.5 Da PI: 9.6194

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-22341	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.4	4.1e-51	25	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp+k+ +e+ewyfFs+rd+ky++g r+nra+ +gyWkatg+dk+++s+ +g++ Sof016658 25 LPAGFRFHPTDEELIVHYLMNQAASIPCPV-PIIAEVNIYQCNPWDLPAKAVFGESEWYFFSPRDRKYPNGARPNRAAGTGYWKATGTDKAIMSTpTGQH 123 799*************************.88***********8777899***********************************989999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kk Lvfy g pkg+ktdW+mheyrl Sof016658 124 IGVKKALVFYGGPPPKGVKTDWIMHEYRL 152 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.37E-62	20	182	IPR003441	NAC domain
PROSITE profile	PS51005	56.128	25	183	IPR003441	NAC domain
Pfam	PF02365	2.3E-26	26	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MAMPSPSPSR SSGSGSCRVA PNLNLPAGFR FHPTDEELIV HYLMNQAASI PCPVPIIAEV 60 NIYQCNPWDL PAKAVFGESE WYFFSPRDRK YPNGARPNRA AGTGYWKATG TDKAIMSTPT 120 GQHIGVKKAL VFYGGPPPKG VKTDWIMHEY RLVTAADGKT ATAAKRRGGS MRLDDWVLCX 180 IHX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-70	22	182	12	166	Stress-induced transcription factor NAC1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during anther and flower development and leaf senescence. {ECO:0000269\|PubMed:22278768}.
Uniprot	TISSUE SPECIFICITY: Highest expression in stamens. Expressed in leaves. {ECO:0000269\|PubMed:18813954, ECO:0000269\|PubMed:22278768}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269\|PubMed:22278768}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269\|PubMed:18813954}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448919.1	1e-112	NAC transcription factor 29
Swissprot	Q8H4S4	3e-78	NAC10_ORYSJ; NAC domain-containing protein 10
TrEMBL	C5Y3M1	1e-111	C5Y3M1_SORBI; NAC69
STRING	Sb05g001580.1	1e-112	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-76	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]