PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016687
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NF-YA
Protein Properties Length: 183aa    MW: 19956.3 Da    PI: 7.055
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-85061PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA607.5e-19143182141
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylhe 41 
                +ep++VNaKQy++Il+RR  Rak+e+++kl  ++rkpylhe
  Sof016687 143 EEPIFVNAKQYNAILRRRXIRAKMEAQNKL-GEGRKPYLHE 182
                69****************************.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-9141183IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115222.718142183IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-14144182IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.9E-11145167IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.9E-11176183IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MDGDPFHPMP NYDFLSGNGY SLKQLVRSNS DIDSSSSKSE QSRQDLSDSS LNGQRTPTQS  60
DNNDICGKRD QGMVKSVLSF GSPEAAFSPH KFDYSQPFAC ASYTADPYHG GVLAGYASNG  120
IVHSQINGAA NTXVPLPVGP AAEEPIFVNA KQYNAILRRR XIRAKMEAQN KLGEGRKPYL  180
HEX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.139801e-90leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467701.11e-112nuclear transcription factor Y subunit A-4
RefseqXP_021304968.11e-112nuclear transcription factor Y subunit A-4
TrEMBLC5WWM81e-111C5WWM8_SORBI; Uncharacterized protein
STRINGSb01g032710.11e-111(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.11e-20nuclear factor Y, subunit A6