PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016712
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 183aa    MW: 19677.6 Da    PI: 8.4915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17461013PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY24.45.8e-08156178123
                ---SS-EEEEEEE--TT-SS-EE CS
       WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                ldDg +WrKYGqK+vk +   r+
  Sof016712 156 LDDGLKWRKYGQKVVKTAFIQRA 178
                58**************9877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-9141178IPR003657WRKY domain
SuperFamilySSF1182902.75E-7148179IPR003657WRKY domain
PROSITE profilePS5081110.453151179IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEGGQLSACL PSFLVPDHYA GFPLPLPLQL PSQPNNKLFQ MPFVVNQEET ENHGGMLSSD  60
HCGGLYLLPA LPFGSCSGAA AATACGGKPT AGFMPSAIGA EEVCTSVATK LGCNESNSTW  120
WKGSAATTAE RGKMKVRRKM REPRFCFQTR SDVDVLDDGL KWRKYGQKVV KTAFIQRAFS  180
GAL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.51380.0inflorescence| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452824.22e-85probable WRKY transcription factor 57
TrEMBLS5FYC91e-103S5FYC9_9POAL; Zinc finger transcription factor WRKY12
STRINGSb04g033240.18e-85(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44745.13e-25WRKY family protein