PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016781
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 182aa    MW: 19703 Da    PI: 8.6375
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17288027PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.9e-0579101123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                y+C+ C + F++   L  H+++H
  Sof016781  79 YTCTFCRREFRSAQALGGHMNVH 101
                9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-676106No hitNo description
Gene3DG3DSA:3.30.160.609.1E-477104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.15779106IPR007087Zinc finger, C2H2
SMARTSM003550.006679101IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-579102IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNSTNAAVDQ MAKYYWGMLG AAGTTTTGAG AVTSSLIRDS WPPLAAHGRS GGEPSWEELA  60
FARDAAGQLG GCVWPPRSYT CTFCRREFRS AQALGGHMNV HRRDRARLRQ CASPSSPPXH  120
DQQEPVAAPL XAXELADHHQ LLQLQGSPLF XTNQAAVLIS GLPASDHHQK YYYNNNKGGG  180
RL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-1374101229superman protein
2l1o_A2e-1374101229Transcriptional regulator SUPERMAN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.163760.0root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459195.11e-101zinc finger protein 10
TrEMBLC5X7291e-99C5X729_SORBI; Uncharacterized protein
STRINGSb02g000330.11e-100(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-28zinc-finger protein 10