PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016818
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 181aa    MW: 19712 Da    PI: 10.7259
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-20613PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.16.5e-32116174259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Sof016818 116 SDEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 174
                69*************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.5E-1769113IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.6E-34103175IPR003657WRKY domain
PROSITE profilePS5081130.033110176IPR003657WRKY domain
SuperFamilySSF1182901.44E-27113174IPR003657WRKY domain
SMARTSM007742.3E-38115175IPR003657WRKY domain
PfamPF031062.1E-27117173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
XSGGGGGGKG VNLKFDSSNC TASSSRSFLS SLSMEGSLVS LDRNRASRPF QLVSGSQTSS  60
TPELGLVHRR RCAGREDGSG RCTTGSRCHC SKKRKLRIRR SIKVPAISNK VADIPSDEFS  120
WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP SMLIVTYEGD HNHNRVLAQP  180
A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21108174772WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.128140.0bud| crown| inflorescence| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466480.11e-109protein WRKY1
RefseqXP_020179772.11e-109protein WRKY1-like
RefseqXP_021307146.11e-109protein WRKY1
SwissprotQ32SG41e-108WRKY1_MAIZE; Protein WRKY1
TrEMBLA0A3B6KP701e-109A0A3B6KP70_WHEAT; Uncharacterized protein
TrEMBLA0A446TEA01e-109A0A446TEA0_TRITD; Uncharacterized protein
STRINGSb01g008550.11e-108(Sorghum bicolor)
STRINGTraes_5DL_A54ED44C9.21e-109(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.17e-51WRKY DNA-binding protein 21