PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016819
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 181aa    MW: 19913.8 Da    PI: 10.8436
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-22114PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.33.1e-0678100123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F r  nL+ H r H
  Sof016819  78 FVCEVCNKGFQREQNLQLHRRGH 100
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-576101No hitNo description
Gene3DG3DSA:3.30.160.601.8E-677100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09478100IPR007087Zinc finger, C2H2
PfamPF121718.4E-678100IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004178100IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028080100IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MASNSSAAAF FGVRDGDQQD QIKPLISPQQ QQAAALPGVA GAPTAAAQPP PKKKRTMPDP  60
DAEVIALSPK TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PLQAQRRRVY  120
LCPEPTCLQQ EPARALGDLA GIKKHFWPQX RGKKSGSAKQ CFKPLAVPSD WKAPSKICGT  180
R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.84850.0inflorescence| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446943.13e-94protein indeterminate-domain 5, chloroplastic
RefseqXP_021318855.13e-94protein indeterminate-domain 5, chloroplastic
SwissprotQ8RWX76e-63IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLC5YE146e-93C5YE14_SORBI; Uncharacterized protein
STRINGPavir.Gb01057.1.p1e-94(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.12e-61indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]