PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof016904
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 180aa    MW: 20837.5 Da    PI: 6.69
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-55989PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.2e-081301632154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp+++++++L +++gL+ +q+ +WF N+R +
  Sof016904 130 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 163
                469*****************************87 PP
2ELK26.41.6e-0984105122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELK +L++++++++ ++++E++
  Sof016904  84 ELKIELKQGFKSRIEDVREEIL 105
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037911.3E-4127IPR005541KNOX2
PROSITE profilePS512139.13284104IPR005539ELK domain
PROSITE profilePS5007111.726104167IPR001356Homeobox domain
SMARTSM003891.9E-10106171IPR001356Homeobox domain
SuperFamilySSF466891.8E-16106171IPR009057Homeodomain-like
CDDcd000862.46E-11107168No hitNo description
Gene3DG3DSA:1.10.10.608.6E-26111170IPR009057Homeodomain-like
PfamPF059204.5E-18124163IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
LQQHVRVHAV EAVMACREIE QSLQDLTGAT LEEGTGATMS EDEDEPPMLE AGLDMGSDGH  60
DMMGFGPLLP TDSERSLMER VRQELKIELK QGFKSRIEDV REEILRKRRA GKLPGDTTSI  120
LKQWWQQHSK WPYPTEDDKA KLVEETGLQL KQINNWFINQ RKRNWHNNSQ TSTLKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-13107163864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160179RKRNWHNNSQTSTLKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.142961e-134bud| crown| inflorescence| leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo at 3 days after pollination (DAP). {ECO:0000269|PubMed:10095070}.
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots and flowers, and at lower levels in leaf blades and leaf sheaths. Isoform 2 is expressed in roots and flowers. {ECO:0000269|PubMed:12034492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468611.21e-130homeobox protein knotted-1-like 3
SwissprotQ94LW31e-124KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A1B6QQV91e-129A0A1B6QQV9_SORBI; Uncharacterized protein
STRINGGRMZM2G159431_P011e-126(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.13e-99KNOTTED-like homeobox of Arabidopsis thaliana 7