PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof016918

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 180aa MW: 20204.4 Da PI: 8.9491

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-93835	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2.1e-10	49	88	5	44
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKka++++Le +L + ++ Sof016918 49 KTMRRLAQNREAARKSRLRKKAYVQQLESSKLKLAQLEQE 88 7789************************855444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-6	44	108	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.45	47	91	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-7	49	92	No hit	No description
Pfam	PF00170	2.2E-7	49	90	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.0E-8	50	94	No hit	No description
PROSITE pattern	PS00036	0	52	67	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MADASSRTDT SIVLDDNDKN QRMENGSGAV VPSNSSDRSD RSDKPLDQKT MRRLAQNREA 60 ARKSRLRKKA YVQQLESSKL KLAQLEQELQ KARQQGIFIS SSGDQTHAMS GNGALTFDIK 120 YARWLEDQNK QINELRTAVN AHCSDSDLRL IVDGIMAHYD GNIQRVKGCC CQRLDVISLX

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269\|PubMed:16045470, ECO:0000269\|PubMed:22353606, ECO:0000269\|PubMed:27176732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001333859.1	1e-102	uncharacterized protein LOC100279481
Refseq	XP_008651318.1	1e-102	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_008651320.1	1e-102	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396043.1	1e-102	uncharacterized protein LOC100279481 isoform X2
Refseq	XP_020396044.1	1e-102	uncharacterized protein LOC100279481 isoform X2
Swissprot	Q7X993	7e-91	TGA21_ORYSJ; Transcription factor TGA2.1
TrEMBL	A0A3L6E4R9	1e-101	A0A3L6E4R9_MAIZE; Transcription factor TGA2.1
TrEMBL	C0HGY0	1e-101	C0HGY0_MAIZE; Transcription factor TGA6
TrEMBL	K4JBS2	1e-101	K4JBS2_MAIZE; BZIP-type transcription factor (Fragment)
STRING	GRMZM2G361847_P01	1e-101	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	7e-53	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yilmaz A, et al. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiol., 2009. 149(1): p. 171-80 [PMID:18987217] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Chern M, et al. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet., 2016. 12(5): p. e1006049 [PMID:27176732]