PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof016922

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C2H2

Protein Properties

Length: 180aa MW: 19549.6 Da PI: 11.0911

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17277479	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.3	3.1e-06	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H Sof016922 78 FVCEVCNKGFQREQNLQLHRRGH 100 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.05E-5	76	101	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-6	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.094	78	100	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.4E-6	78	100	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MASNSSAAAF FGVRDGDQQD QIKPLISPQQ QQAAALPGVA GAPTAAAQPP PKKKRTMPDP 60 DAEVIALSPK TLLATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLNQKT PLQAQRRRVY 120 LCPERRACHK NRPAPLATGG DQKALLAAAR GKKSGSAKQC FKPLAVPSDW KAPSKICGTR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.8485	0.0	inflorescence\| meristem\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002446943.1	5e-78	protein indeterminate-domain 5, chloroplastic
Refseq	XP_021318855.1	5e-78	protein indeterminate-domain 5, chloroplastic
Swissprot	O22759	5e-49	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	C5YE14	1e-76	C5YE14_SORBI; Uncharacterized protein
STRING	Pavir.Gb01057.1.p	5e-79	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	4e-46	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]