PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017043
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 178aa    MW: 20519 Da    PI: 9.6299
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-23133727PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM182.88.6e-57221491129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrFhPtdee++++yL++k+ ++++    vi evd++k+ePwdLp ++k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdke+++ +g lv
  Sof017043  22 LPPGFRFHPTDEEIISHYLTHKALNHRFVS-GVIGEVDLNKCEPWDLPGRAKMGEKEWYFFCHKDRKYPTGTRTNRATETGYWKATGKDKEIFRGRGILV 120
                79*************************888.99***************99999*********************************************** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrle 129
                g+kktLvfy+grap+gekt Wvmhe+rle
  Sof017043 121 GMKKTLVFYRGRAPRGEKTGWVMHEFRLE 149
                **************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-6515172IPR003441NAC domain
PROSITE profilePS5100559.09922172IPR003441NAC domain
PfamPF023653.0E-2923148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MSEVSVINQA EVEDAGAGQL DLPPGFRFHP TDEEIISHYL THKALNHRFV SGVIGEVDLN  60
KCEPWDLPGR AKMGEKEWYF FCHKDRKYPT GTRTNRATET GYWKATGKDK EIFRGRGILV  120
GMKKTLVFYR GRAPRGEKTG WVMHEFRLEG KLSHPLPRFX KDEWAVCKVF NKELAARX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-56131736169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.134751e-111callus
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465330.11e-125NAC domain-containing protein 79
SwissprotQ9FK447e-87NAC87_ARATH; NAC domain-containing protein 87
TrEMBLC5X1Q21e-124C5X1Q2_SORBI; Uncharacterized protein
STRINGSb01g036590.11e-125(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.13e-89Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]