PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017180
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 176aa    MW: 19421.3 Da    PI: 10.9168
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-126369PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-1957107256
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Sof017180  57 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARRIRGA 107
                6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.9E-3857120IPR001471AP2/ERF domain
PROSITE profilePS5103224.48757114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3257115IPR001471AP2/ERF domain
CDDcd000184.88E-1757116No hitNo description
SuperFamilySSF541712.55E-2257115IPR016177DNA-binding domain
PRINTSPR003673.1E-115869IPR001471AP2/ERF domain
PfamPF008477.9E-1358106IPR001471AP2/ERF domain
PRINTSPR003673.1E-118096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MCGGAIIFDY IPARRRVSAA DFWPDSEADA EDSHASHTPA PERAPLAKKA KRGRKNQYRG  60
IRQRPWGKWA AEIRDPVKGV RVWLGTYPTA EAAARAYDRA ARRIRGAKAK VNFPNDTSPT  120
VTVPTAAASG LLLLHRPPDV LPAPKVKAQT QVSNKVKELS NQLMAYKNYM TFLGSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2357114563ATERF1
3gcc_A8e-2357114563ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.61930.0callus| crown| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.13e-78uncharacterized protein LOC100193143
TrEMBLA0A3L6FDM47e-78A0A3L6FDM4_MAIZE; Ethylene-responsive transcription factor ERF071
STRINGGRMZM2G169382_P011e-77(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-29ERF family protein