PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017204

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 176aa MW: 18149.4 Da PI: 10.6713

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-64098	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.9	2e-09	86	111	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + t Ck+Gd+C+FaH++ Sof017204 86 KTRMCTKYNTTEGCKFGDKCHFAHSE 111 9***********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.582	84	112	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.22E-8	84	115	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-14	85	116	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.5E-6	86	111	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MEGTAAARKR SRPETANGAV AGGKRSKVPL GARLVRDAIF CXFVPGGYPA VAKMLNLGSP 60 AVSAPSRTHV DHAALTGASH PASTGKTRMC TKYNTTEGCK FGDKCHFAHS ERELGKPAYM 120 SHEGPPMGGR YGGRPEPLQQ ASMGPPARNF GASATAKISV DGSPAGGIIR KGGVNT

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.7565	0.0	bud\| crown\| inflorescence\| leaf\| root\| seed\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002447282.1	2e-97	zinc finger CCCH domain-containing protein 31
Swissprot	Q7XPK1	7e-64	C3H31_ORYSJ; Zinc finger CCCH domain-containing protein 31
TrEMBL	C5Y9Z9	4e-96	C5Y9Z9_SORBI; Uncharacterized protein
STRING	Sb06g032000.1	6e-97	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	4e-09	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]