PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017300
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 175aa    MW: 18769.9 Da    PI: 6.1149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17276015PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.0005260941554
               HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               +i ++ + L++l+ +      +K + a++L++A  YIk L
  Sof017300 60 KIGERVAALQQLVSPF-----GKTDTASVLQEASXYIKFL 94
               6667778888888887.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.3574594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-1148109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-55099No hitNo description
Gene3DG3DSA:4.10.280.101.3E-759103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAEVANHSKR NHADSYFSGK AVAAAAAATG PEELGSMSSK KPRNTNPRIA PVSPKEKKDK  60
IGERVAALQQ LVSPFGKTDT ASVLQEASXY IKFLHQQLEV LSSPYMACSP AAGTVPEDPE  120
HYSLRDRGLC LVPVDLTLEL TQSNGADLWA PATRTSAGEE RPVGLALAWP EEPAW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.105250.0callus| crown| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021319652.15e-94transcription factor bHLH153-like
SwissprotQ7XJU22e-39BH153_ARATH; Transcription factor bHLH153
TrEMBLA0A1B6PLR51e-92A0A1B6PLR5_SORBI; Uncharacterized protein
STRINGSb06g021190.12e-93(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05710.58e-42bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]