PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017332

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

WRKY

Protein Properties

Length: 174aa MW: 18413.3 Da PI: 8.7211

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-127547	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.7	1.6e-30	97	155	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnhe Sof017332 97 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYTFDHNHE 155 69***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.3E-31	91	157	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	94	157	IPR003657	WRKY domain
SMART	SM00774	3.2E-36	96	156	IPR003657	WRKY domain
PROSITE profile	PS50811	32.007	97	157	IPR003657	WRKY domain
Pfam	PF03106	3.6E-26	98	155	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MSSAEDGYCS SDSPRAESPD EPPLPAAGAG ADADAESLRA GAAGLNKRER DLPASPSSPL 60 PPAKRSRRSV EKRVVSVPLA ECGDRPTGAT GEGPPPSDSW AWRKYGQKPI KGSPYPRGYY 120 RCSSSKGCPA RKQVERSRAD PTVLLVTYTF DHNHEAPQPK SSGGSCHQEG KPSP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	8e-20	72	154	6	76	Disease resistance protein RRS1
5w3x_D	8e-20	72	154	6	76	Disease resistance protein RRS1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.9591	7e-33	crown\| meristem\| root\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458491.1	6e-93	probable WRKY transcription factor 65
Swissprot	Q9LP56	3e-44	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	C5XK43	1e-91	C5XK43_SORBI; Uncharacterized protein
STRING	Sb03g034670.1	2e-92	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	3e-37	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]