PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017342

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

EIL

Protein Properties

Length: 174aa MW: 18797.3 Da PI: 6.5114

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-53228	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	41.5	3e-13	81	169	4	87
XXXXXXXXXXXXXXXXXXXX..XXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 4 kkrmwkdqmllkrlkerkkqlledkeaa.....tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvega 87 ++ mw+d+m+lkrl+e ++++ +d a g++k ++s+eqarrkkms Q + L + +e + + g+ p+kgkpv+ga Sof017342 81 ERPMWRDRMKLKRLRELQQSRGKDSMAGggglaDGSSKPRQSQEQARRKKMSAPQMASLSTCSRLLECAAHKALCIGSFPKKGKPVNGA 169 677*************999877766688887889999*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	2.5E-10	81	169	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MMGGGLMMDQ SVVFPGVHNF VDLLQQNGDK NLAFGSLMPQ TSSGDQCVMG EGDLGDPPPE 60 SFPDAGEDDS EDDVEDIKNR ERPMWRDRMK LKRLRELQQS RGKDSMAGGG GLADGSSKPR 120 QSQEQARRKK MSAPQMASLS TCSRLLECAA HKALCIGSFP KKGKPVNGAP ITPC

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, leaf blades, leaf sheaths, stems, internodes, anthers of young flowers, and developing grains. {ECO:0000269\|PubMed:25995326}.
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots (PubMed:19798512). Expressed at low levels in leaves and panicles (PubMed:19798512). {ECO:0000269\|PubMed:19798512}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:16786297, PubMed:28829777, PubMed:27701783, PubMed:25995326). Required for the inhibition of root growth by ethylene in etiolated seedlings (PubMed:25995326, PubMed:28829777). Functions upstream of the auxin biosynthetic gene YUCCA8 and directly activates its expression (PubMed:28829777). Functions downstream of the ethylene signaling factor EIN2 in disease resistance against the rice blast fungus (Magnaporthe oryzae) (PubMed:27701783). Binds directly to the promoters of the NADPH oxidases RBOHA and RBOHB, and the jasmonate biosynthetic gene OPR4 to activate their expression during fungal infection (PubMed:27701783). May enhance disease resistance by facilitating reactive oxygen species (ROS) generation and jasmonate biosynthesis with subsequent phytoalexin accumulation during Magnaporthe oryzae infection (PubMed:27701783). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269\|PubMed:16786297, ECO:0000269\|PubMed:25995326, ECO:0000269\|PubMed:27701783, ECO:0000269\|PubMed:28829777, ECO:0000269\|PubMed:30002253}.
UniProt	Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). {ECO:0000269\|PubMed:19798512, ECO:0000269\|PubMed:30002253}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the fungal pathogen Magnaporthe oryzae. {ECO:0000269\|PubMed:27701783}.
UniProt	INDUCTION: Induced by wounding. {ECO:0000269\|PubMed:19798512}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467935.1	4e-77	ETHYLENE INSENSITIVE 3-like 1 protein
Refseq	XP_021317527.1	4e-77	ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q10M41	2e-61	EIL1A_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1a
Swissprot	Q8W3M0	3e-61	EIL1B_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1b
TrEMBL	A0A2U8KGF7	7e-77	A0A2U8KGF7_9POAL; Ethylene-insensitive-3 (Fragment)
STRING	Sb01g036740.1	1e-76	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20770.1	1e-20	EIL family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C, et al. MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice. Plant Physiol., 2015. 169(1): p. 148-65 [PMID:25995326] Yang C, et al. Activation of ethylene signaling pathways enhances disease resistance by regulating ROS and phytoalexin production in rice. Plant J., 2017. 89(2): p. 338-353 [PMID:27701783] Qin H, et al. The activation of OsEIL1 on YUC8 transcription and auxin biosynthesis is required for ethylene-inhibited root elongation in rice early seedling development. PLoS Genet., 2017. 13(8): p. e1006955 [PMID:28829777] Kuroha T, et al. Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science, 2018. 361(6398): p. 181-186 [PMID:30002253]