PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017390

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HSF

Protein Properties

Length: 173aa MW: 18919.5 Da PI: 10.1551

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-119631	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112.5	3e-35	51	143	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ +isws++g sfv++d++ f++++Lp++Fkh++f+SF+RQLn+YgF+kv+ ++ we++++ F kg+k+ll++ik Sof017390 51 FLTKVYDMVSDPATDAVISWSATGGSFVIWDSHVFERDLLPRHFKHNHFTSFIRQLNTYGFHKVDPDR---------WEWANEGFVKGQKHLLKTIK 138 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkk++ Sof017390 139 RKKKS 143 986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	7.75E-35	47	140	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-55	47	140	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	1.7E-37	48	140	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	5.5E-19	51	74	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.3E-32	51	140	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-19	89	101	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	5.5E-19	102	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGSKKRSPQH PASPAGGEVG AQTAGKATPV TAAPESAPVA VVPKPPDVAP FLTKVYDMVS 60 DPATDAVISW SATGGSFVIW DSHVFERDLL PRHFKHNHFT SFIRQLNTYG FHKVDPDRWE 120 WANEGFVKGQ KHLLKTIKRK KKSSQDVPSD LQSVPVKTAP GTENIEIRKI CGP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	4e-27	45	143	14	123	Heat shock factor protein 1
5d5u_B	4e-27	45	140	23	129	Heat shock factor protein 1
5d5v_B	4e-27	45	140	23	129	Heat shock factor protein 1
5d5v_D	4e-27	45	140	23	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002468244.1	1e-118	heat stress transcription factor A-9
Refseq	XP_021306702.1	1e-118	heat stress transcription factor A-9
Swissprot	Q10PR4	2e-76	HSFA9_ORYSJ; Heat stress transcription factor A-9
TrEMBL	C5WSM1	1e-116	C5WSM1_SORBI; Uncharacterized protein
STRING	Sb01g042370.1	1e-117	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	5e-41	heat shock factor 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]