PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017409

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 173aa MW: 19698.9 Da PI: 9.5826

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-51488	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.7	1.8e-56	23	150	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrFhPtdee+v++yL++k+ ++++++ vi++vd++k+ePwdLp+k+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ ++ lv Sof017409 23 LPPGFRFHPTDEEVVTHYLTNKALNSSFSC-VVIADVDLNKIEPWDLPSKAKMGEKEWYFFCHKDRKYPTGMRTNRATASGYWKATGKDKEIFRGHRVLV 121 79************************99.78***********99999**************************************99999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy+grap+g kt Wvmheyrle Sof017409 122 GMKKTLVFYTGRAPRGGKTPWVMHEYRLE 150 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-62	20	173	IPR003441	NAC domain
PROSITE profile	PS51005	57.316	23	173	IPR003441	NAC domain
Pfam	PF02365	7.8E-30	24	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MASEVSSETN QQGGGEEETR LDLPPGFRFH PTDEEVVTHY LTNKALNSSF SCVVIADVDL 60 NKIEPWDLPS KAKMGEKEWY FFCHKDRKYP TGMRTNRATA SGYWKATGKD KEIFRGHRVL 120 VGMKKTLVFY TGRAPRGGKT PWVMHEYRLE GSLAXXLRRG GKDEWAVCKV VTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	19	173	13	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	19	173	13	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	19	173	13	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	19	173	13	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	19	173	16	168	NAC domain-containing protein 19
3swm_B	2e-56	19	173	16	168	NAC domain-containing protein 19
3swm_C	2e-56	19	173	16	168	NAC domain-containing protein 19
3swm_D	2e-56	19	173	16	168	NAC domain-containing protein 19
3swp_A	2e-56	19	173	16	168	NAC domain-containing protein 19
3swp_B	2e-56	19	173	16	168	NAC domain-containing protein 19
3swp_C	2e-56	19	173	16	168	NAC domain-containing protein 19
3swp_D	2e-56	19	173	16	168	NAC domain-containing protein 19
4dul_A	2e-56	19	173	13	165	NAC domain-containing protein 19
4dul_B	2e-56	19	173	13	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002461233.1	1e-118	NAC domain-containing protein 79
Swissprot	Q9FK44	9e-79	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	C5X5P9	1e-116	C5X5P9_SORBI; Uncharacterized protein
STRING	Sb02g043270.1	1e-117	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	2e-81	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]