PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017480
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MIKC_MADS
Protein Properties Length: 172aa    MW: 20220.6 Da    PI: 6.9561
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-41454PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.15.6e-24958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               krien ++rq tf kRr g++KKA ELSvLCd++ ++++fs++gkly y 
  Sof017480  9 KRIENPTQRQSTFYKRRDGLFKKARELSVLCDVDLLLLLFSTSGKLYHYL 58
               79*********************************************996 PP
2K-box21.87.6e-0972145174
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74 
                y++++++++++   ++ + el+k ++  e +++e+R +  +d e+ ++  L+ Le +Le ++ k+R  K++ + 
  Sof017480  72 YEAATHTKVWTDIRQERRAELEKAEQMCELMEKELRFMTVDDGEQYTVPSLELLEXHLEAAVHKVRFEKDRQIG 145
                566778889*********************************************************99987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.581161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-28291IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-23323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-233859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-884168IPR002487Transcription factor, K-box
PROSITE profilePS512978.59785172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MGRGRSEIKR IENPTQRQST FYKRRDGLFK KARELSVLCD VDLLLLLFST SGKLYHYLSP  60
TVPSVKDLVE RYEAATHTKV WTDIRQERRA ELEKAEQMCE LMEKELRFMT VDDGEQYTVP  120
SLELLEXHLE AAVHKVRFEK DRQIGGEDHL LENIFRGRHE ERHGLCXQLA HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-14184184MEF2 CHIMERA
6byy_B1e-14184184MEF2 CHIMERA
6byy_C1e-14184184MEF2 CHIMERA
6byy_D1e-14184184MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.202400.0inflorescence
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311534.11e-103MADS-box transcription factor 32 isoform X2
RefseqXP_025818300.11e-103MADS-box transcription factor 32 isoform X1
SwissprotQ8S1512e-96MAD32_ORYSJ; MADS-box transcription factor 32
TrEMBLA0A1B6Q5V71e-101A0A1B6Q5V7_SORBI; Uncharacterized protein
TrEMBLA0A2S3HS291e-101A0A2S3HS29_9POAL; Uncharacterized protein
TrEMBLA0A2T7DHB41e-101A0A2T7DHB4_9POAL; Uncharacterized protein
TrEMBLA0A3L6R5R51e-101A0A3L6R5R5_PANMI; MADS-box transcription factor 32 isoform X1
STRINGPavir.Eb02653.1.p1e-102(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.26e-19MIKC_MADS family protein
Publications ? help Back to Top
  1. Wang H, et al.
    OsMADS32 interacts with PI-like proteins and regulates rice flower development.
    J Integr Plant Biol, 2015. 57(5): p. 504-13
    [PMID:25081486]
  2. Khanday I, et al.
    Genome-Wide Targets Regulated by the OsMADS1 Transcription Factor Reveals Its DNA Recognition Properties.
    Plant Physiol., 2016. 172(1): p. 372-88
    [PMID:27457124]