PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017593
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family Dof
Protein Properties Length: 170aa    MW: 18487.4 Da    PI: 8.3137
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-103082PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof62.29.5e-2094135243
     zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkG 43 
                ++k+l+cp C+s++tkfCyynny+++qP  f k+ +r Wt G
  Sof017593  94 PDKILPCPPCNSMDTKFCYYNNYNINQPXPFLKNLQRDWTGG 135
                7899************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-1290135IPR003851Zinc finger, Dof-type
PfamPF027015.0E-1596135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088416.24698152IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MGEGRAGDGL IKLFGKTIPV PETPAVGEAA KDIQQSGSSG TTDPKGQENT LQDSTGSPPQ  60
QEVADTEDSS AAKNSSADKQ QGEVANQKEK LKKPDKILPC PPCNSMDTKF CYYNNYNINQ  120
PXPFLKNLQR DWTGGVPFPK CLGVQARPKN QTALTRFHFP GEGRARFANW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468428.13e-82cyclic dof factor 1 isoform X1
TrEMBLC5WWR67e-81C5WWR6_SORBI; Dof-type zinc finger protein
STRINGSb01g045840.11e-81(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.21e-16cycling DOF factor 2