PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017656
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GeBP
Protein Properties Length: 170aa    MW: 18456.6 Da    PI: 8.7216
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17442018PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57368.11.9e-21693997
     DUF573  9 eeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97
               e+De+ +LqGl+ +   +g     d++ fy+ +++s+   +++ ql+eK+rrLK+Kf+ ++++++ g +p+  ++hd+++++l++++W+
  Sof017656  6 ESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRAQLSEKLRRLKNKFRIMSARVAGGLDPARLAPHDRDVLHLCSRLWD 93
               79************.556878888****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.2E-19693IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
SASGPESDEL RFLQGLLGCG AQGLVFPRDL NVFYDRFSES MPQPYTRAQL SEKLRRLKNK  60
FRIMSARVAG GLDPARLAPH DRDVLHLCSR LWDPANAATS PFAASAGTSG NKRRRAKPRG  120
TPLPPPDASG DSNSHELHGI GSSAPGLFPD GSNGDDMFYL EQESGYLRQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117NKRRRAKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.69450.0inflorescence| leaf| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464013.11e-105probable transcription factor At3g04930
RefseqXP_021307245.11e-105probable transcription factor At3g04930
TrEMBLC5WNQ31e-104C5WNQ3_SORBI; Uncharacterized protein
STRINGSb01g010570.11e-104(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.12e-08DNA-binding storekeeper protein-related transcriptional regulator