PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017723

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HB-other

Protein Properties

Length: 169aa MW: 18860.5 Da PI: 11.1639

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17444972	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	32.5	1.4e-10	74	127	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ +++ + k gL++r vWF NrR++ k Sof017723 74 KKRRLTPEQVHLLERSFEGGEHLDHGRKTGMVPKRGLQTRPLGVWFRNRRTRGK 127 5678************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.04E-10	68	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.568	69	129	IPR001356	Homeobox domain
SMART	SM00389	4.8E-4	72	133	IPR001356	Homeobox domain
CDD	cd00086	6.65E-5	74	130	No hit	No description
Pfam	PF00046	6.5E-8	74	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	8.0E-11	75	131	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MESGRIIFNA PGSGAGQMLF LDCGAPGGHG GGLFHRGGRP MLGLEEGRGV KRPFFNSPDE 60 LLEEEYYDEQ LPEKKRRLTP EQVHLLERSF EGGEHLDHGR KTGMVPKRGL QTRPLGVWFR 120 NRRTRGKNHR RWNGISNRPK GLLSRVPGPN HKVLLPETTP AVRSKGGVV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.18018	0.0	crown\| inflorescence\| leaf\| meristem\| root\| seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003572981.1	1e-50	homeobox-leucine zipper protein HOX16
Swissprot	Q6YWR4	2e-41	HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16
TrEMBL	A0A287UN35	1e-51	A0A287UN35_HORVV; Uncharacterized protein
TrEMBL	A0A287UNH2	1e-52	A0A287UNH2_HORVV; Uncharacterized protein
TrEMBL	F2DJD8	4e-51	F2DJD8_HORVV; Predicted protein
TrEMBL	M0X3C2	5e-51	M0X3C2_HORVV; Uncharacterized protein
STRING	MLOC_5668.1	8e-52	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-19	homeobox 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]