PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017751
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family Trihelix
Protein Properties Length: 168aa    MW: 18174.5 Da    PI: 10.6625
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-44456PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix28.34.7e-0911524586
   trihelix 45 rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
               +s +qCk+k++nl+kryk + ++  +   +++s++p+f++le
  Sof017751 11 KSVEQCKNKIDNLKKRYKVECQRLTSSGGGATSHWPWFKKLE 52
               6889**************99999999989999********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.0E-101154No hitNo description
Gene3DG3DSA:3.40.1160.102.8E-14107166IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.57E-10109165IPR001048Aspartate/glutamate/uridylate kinase
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
XDAWGKTTGG KSVEQCKNKI DNLKKRYKVE CQRLTSSGGG ATSHWPWFKK LEQIVGDSVS  60
PASSKPLAAA EDVKPRQQQQ QHGSKRYPLS STGPPSGVGS SRTNPLSNPR WKRVLLKIGG  120
TALRGAAPQN VDPKVIMLIA REVQVACHQG VEVAIVVGGR NIFCGDNW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.98180.0bud| inflorescence| leaf| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446396.11e-110uncharacterized protein LOC8072072
TrEMBLA0A059Q0221e-114A0A059Q022_9POAL; Aspartate/glutamate/uridylate kinase
STRINGSb06g015280.11e-110(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.22e-49Trihelix family protein