PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017774
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 168aa    MW: 19313.6 Da    PI: 9.1936
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-99306PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox309e-10951302055
                HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Sof017774  95 YKWPYPSETEKIVLAESTGLDQKQINNWFINQRKRH 130
                5679*****************************985 PP
2ELK39.21.5e-135071122
        ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
               ELK qLl+KYsgyL+sL+qEFs
  Sof017774 50 ELKYQLLKKYSGYLSSLRQEFS 71
               9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037891.6E-105071IPR005539ELK domain
PROSITE profilePS5121311.6275070IPR005539ELK domain
SMARTSM011881.2E-75071IPR005539ELK domain
PROSITE profilePS5007112.69870133IPR001356Homeobox domain
SuperFamilySSF466893.64E-2071145IPR009057Homeodomain-like
SMARTSM003891.0E-1272137IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.8E-2875134IPR009057Homeodomain-like
CDDcd000861.11E-1282134No hitNo description
PfamPF059204.0E-1790129IPR008422Homeobox KN domain
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
XGSSSAARLS LTVLSADGKS EGVGSSEDDM DPSGRENDPL EIDPRAENKE LKYQLLKKYS  60
GYLSSLRQEF SKKKKKGKLP KEARQKLLHW WELHYKWPYP SETEKIVLAE STGLDQKQIN  120
NWFINQRKRH WKPSEDMPFV MMEGFHPQNA AALYMDGPFM ADGVYRLG
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the shoot apical meristem in a circular pattern preceding leaf initiation, but is not detectable in leaf primordia or mature leaves in normal plants. Rings of RS1 expression subtend leaf insertion sites in the shoot, and lateral organ primordia in inflorescence and floral meristems.
Functional Description ? help Back to Top
Source Description
UniProtPlays a possible role in patterning the placement of lateral organs along the axis of the shoot. Mutations in RS1 alters cell fate and causes unregulated cell division and expansion in the leaf. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.11e-101homeobox protein rough sheath 1
SwissprotQ418534e-99RSH1_MAIZE; Homeobox protein rough sheath 1
TrEMBLA0A2T7EKK81e-100A0A2T7EKK8_9POAL; Uncharacterized protein
STRINGSb02g002200.11e-100(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.13e-57KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Schneeberger RG,Becraft PW,Hake S,Freeling M
    Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf.
    Genes Dev., 1995. 9(18): p. 2292-304
    [PMID:7557382]
  2. Kerstetter R, et al.
    Sequence analysis and expression patterns divide the maize knotted1-like homeobox genes into two classes.
    Plant Cell, 1994. 6(12): p. 1877-87
    [PMID:7866030]