PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017776
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 168aa    MW: 18708.3 Da    PI: 5.5514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17261646PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002106128223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C++++++  +L+ H +  H
  Sof017776 106 SCSVCSRVYPTLRLLNIHVSEaH 128
                6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003552278103IPR015880Zinc finger, C2H2-like
SMARTSM003552.9105128IPR015880Zinc finger, C2H2-like
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQQKPDDGMA EAAPKAAAVT GPELGFWLAA RRRLAPDDPF FAAGDLEREL LAKHLALDFS  60
EDDRNQLEKM EVASTCTVFC PIASCGAHLD CLEEFEDHYV TRHTASCSVC SRVYPTLRLL  120
NIHVSEAHDS YFQAKVGPWF PMYECLAEGR GMKLKNSKSP APHLIDRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.225570.0bud| inflorescence| leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449527.26e-95LOW QUALITY PROTEIN: zinc finger protein 511
TrEMBLA0A3L6FR811e-95A0A3L6FR81_MAIZE; Zinc finger protein 511
TrEMBLB6T5I81e-95B6T5I8_MAIZE; Zinc finger protein 511
STRINGSb05g017930.11e-94(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.13e-59zinc ion binding;nucleic acid binding;zinc ion binding