PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017779
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 168aa    MW: 18206.5 Da    PI: 8.7507
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17291379PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-1066110554
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                h+e+ErrRR+riN  +++Lr+++P       + ++Ka+ L ++ve +k L
  Sof017779  66 HSEAERRRRERINAHLATLRRMIPDT-----RQMDKATLLARVVEQVKLL 110
                9************************8.....68********999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.44361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-1465135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-866110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1366128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-1067116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MAACQPLQGK ELQPYDGFDP SVFGGPVLLP RQASSAPPAV QVAPPEMSSS SGSGRSATEA  60
RALKIHSEAE RRRRERINAH LATLRRMIPD TRQMDKATLL ARVVEQVKLL KRKASEATTQ  120
STPLPPETDE VSIELHTGAD KVIYIRASIS CDDRPDLVAG LAPGVPWX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.110620.0bud| leaf| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457305.12e-77transcription factor bHLH51
RefseqXP_021311070.12e-77transcription factor bHLH51
RefseqXP_021311071.12e-77transcription factor bHLH51
TrEMBLC5XP744e-76C5XP74_SORBI; Uncharacterized protein
STRINGSb03g005250.17e-77(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-18bHLH family protein