PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017874
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 167aa    MW: 17603.2 Da    PI: 10.2019
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17475078PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.21.6e-184432059
               S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                 rsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  Sof017874  4 ACRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 43
               57*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007745.4E-10244IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.0E-17445IPR003657WRKY domain
SuperFamilySSF1182904.84E-15545IPR003657WRKY domain
PfamPF031064.8E-13543IPR003657WRKY domain
PROSITE profilePS5081118.831645IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MARACRSYYR CTTQKCPVKK RVERSYQDPA VVITTYEGKH THPIPATLRG STHLLAAQLH  60
GGHHHLGGGG GGGVIDMLGL LPPRNNHAMP PAIGLASSRG MSGGGPMSTV AAAATTTAAT  120
TTTTSSSPPS LQMQNFMAQD FWLLQDMLPV FVHSNGGNIH PLIRPIG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.228150.0callus| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458273.14e-63probable WRKY transcription factor 48
TrEMBLC5XFY79e-62C5XFY7_SORBI; Uncharacterized protein
STRINGSb03g030480.11e-62(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.11e-24WRKY DNA-binding protein 71