PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017906
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MIKC_MADS
Protein Properties Length: 166aa    MW: 18958.3 Da    PI: 9.6735
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-53133727PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-251261251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  Sof017906 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 61
               89********************************************9986 PP
2K-box20.81.6e-08901651591
      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                   +   ++Lk+e+ +   ++ ++ Ge+L++Ls  +Lq+Le+ L+ + +   ++K++ +l++i+ l +k  el ee+
  Sof017906  90 HIDDGTCSRLKEELAQTSLKLXQMRGEELQRLSRPQLQELEKTLDPA-SLCTQTKSQXILDEISGLERKRMELIEEK 165
                444456789************************************98.5667899**************99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.151363IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-33362IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-29588IPR002100Transcription factor, MADS-box
PROSITE patternPS003500559IPR002100Transcription factor, MADS-box
CDDcd002651.07E-37579No hitNo description
PRINTSPR004045.7E-25525IPR002100Transcription factor, MADS-box
PfamPF003199.0E-251259IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-252540IPR002100Transcription factor, MADS-box
PRINTSPR004045.7E-254061IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.23689166IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFHFA  60
STSMKQVIDR YDSHSKNLQK SEALSQLQSH IDDGTCSRLK EELAQTSLKL XQMRGEELQR  120
LSRPQLQELE KTLDPASLCT QTKSQXILDE ISGLERKRME LIEEKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-19575373MEF2C
5f28_B2e-19575373MEF2C
5f28_C2e-19575373MEF2C
5f28_D2e-19575373MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.45670.0crown| inflorescence| leaf| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:15682279}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307340.11e-98MADS-box transcription factor 47-like isoform X1
RefseqXP_021307341.11e-98MADS-box transcription factor 47-like isoform X1
SwissprotQ5K4R01e-78MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLB5TRK93e-99B5TRK9_SACOF; MADS box protein
TrEMBLC0KIU83e-99C0KIU8_9POAL; MADS box transcription factor
STRINGSb01g044810.15e-98(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-53MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]