PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017928

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Trihelix

Protein Properties

Length: 166aa MW: 18804.3 Da PI: 10.6194

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17264500	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	38.3	3.4e-12	18	103	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r + +qCk++ + l+k+yk+++++ + s c+++ ql Sof017928 18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARRRPPCTDIQCKNRVDTLKKKYKAERARGGP------SPCAFYGQL 103 7***********************************9999888777777899**************9998775......346666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.6E-23	16	105	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG 60 ASARRRPPCT DIQCKNRVDT LKKKYKAERA RGGPSPCAFY GQLDPLVGPT LTGSKKLYSP 120 RAGLPVFRRR QTPPGFRSXD FPAALSMRFR CTFPSWFLPP FRNLIY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.21114	0.0	inflorescence\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002458303.1	1e-74	trihelix transcription factor ASIL2
Swissprot	Q9LJG8	2e-30	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	C5XG36	3e-73	C5XG36_SORBI; Uncharacterized protein
STRING	Sb03g030880.1	6e-74	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-29	sequence-specific DNA binding transcription factors