PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017930
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 166aa    MW: 17668.2 Da    PI: 8.7061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17291517PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.52.2e-202171256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
               + +GVr ++ +gr++AeIrdp     r +r++lg+f+t+e+Aa+a++aa+++l+g+
  Sof017930 21 RLRGVRKRP-WGRYAAEIRDP---A-RkARVWLGTFDTPEQAARAYDAAARRLRGP 71
               679******.**********8...2.35**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.38E-162079No hitNo description
PfamPF008471.7E-142070IPR001471AP2/ERF domain
SMARTSM003805.3E-302184IPR001471AP2/ERF domain
PROSITE profilePS5103223.0642180IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-212179IPR016177DNA-binding domain
PRINTSPR003678.3E-102233IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-292378IPR001471AP2/ERF domain
PRINTSPR003678.3E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAPRRSSEER AAAEEEREQP RLRGVRKRPW GRYAAEIRDP ARKARVWLGT FDTPEQAARA  60
YDAAARRLRG PRATTNYNYP DAVAVPAPPC TAPAASASCG TESSSSSSSR DGNHPLAVTX  120
AGAAPPAPSP SSLDLSLGLF PTMVAAQPYL FLDPMPGLAQ LAADEX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-192377762ATERF1
3gcc_A1e-192377762ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.180820.0crown| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401288.15e-42ethylene-responsive transcription factor ERF098
TrEMBLA0A3L6GBN48e-41A0A3L6GBN4_MAIZE; Ethylene-responsive transcription factor 11
STRINGGRMZM2G020054_P012e-41(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.15e-19ERF domain protein 11