PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof017936

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

LBD

Protein Properties

Length: 166aa MW: 18152.5 Da PI: 10.9967

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17347898	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.6	7.1e-32	29	101	1	73
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPv 73 +CaaCk+lrrk +++Cv+apyfp e+pkkfanvhk+FGasnv+kllk+l +++reda+ssl+y+Aear+ dP Sof017936 29 PCAACKFLRRKVPPGCVFAPYFPPEEPKKFANVHKVFGASNVTKLLKELLPHQREDAVSSLAYQAEARVMDPG 101 7***********************************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.712	28	130	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-30	29	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MASPSSTSNN SALSPVAASG TTTPGAGAPC AACKFLRRKV PPGCVFAPYF PPEEPKKFAN 60 VHKVFGASNV TKLLKELLPH QREDAVSSLA YQAEARVMDP GLRLRRRHLR ASKARDNRLQ 120 KEADPRPRRA SSITPAETID DVIHNRASRS KCRPKAFHGI EQNQPX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-47	22	124	4	105	LOB family transfactor Ramosa2.1
5ly0_B	2e-47	22	124	4	105	LOB family transfactor Ramosa2.1
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Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.5058	0.0	crown\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in a band of cells at the adaxial base of all lateral organs formed from the shoot apical meristem and at the base of lateral roots. {ECO:0000269\|PubMed:12068116}.

Functional Description ? help Back to Top
Source	Description
UniProt	Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269\|PubMed:11934861}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818403.1	8e-62	protein LATERAL ORGAN BOUNDARIES-like
Refseq	XP_025818404.1	8e-62	protein LATERAL ORGAN BOUNDARIES-like
Swissprot	Q9FML4	7e-42	LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES
TrEMBL	A0A2S3HY84	2e-60	A0A2S3HY84_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DRP8	2e-60	A0A2T7DRP8_9POAL; Uncharacterized protein
TrEMBL	A0A3L6SKA6	2e-60	A0A3L6SKA6_PANMI; LOB domain-containing protein 4-like
STRING	Pavir.J38993.1.p	1e-60	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	6e-40	LBD family protein

Publications ? help Back to Top
Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138]