PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof017939
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C3H
Protein Properties Length: 166aa    MW: 18195.1 Da    PI: 6.3928
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17363327PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-063450522
               --SGGGGTS--TTTTT-S CS
    zf-CCCH  5 lCrffartGtCkyGdrCk 22
                C f+++ G C++G+rC+
  Sof017939 34 VCTFYQK-GACSFGSRCR 50
               5******.*********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.192128IPR000571Zinc finger, CCCH-type
SMARTSM003560.006227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6426IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3752956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00583155IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-43450IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MSRRVPCKFF LHGACFKGDY CEFSHDCNDQ PDNVCTFYQK GACSFGSRCR NEHVEVHRNC  60
PQPATTAARA SSNSSQLVAS SRDPHCSECQ TDLCDQTQQI CKSTTTLSAH QPAWAVDYHD  120
HDTPDDTTSW PSXQAVQNQT LQNPAHLSXG SSAAAGTCPY GKDCSX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.231690.0meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452642.11e-107E3 ubiquitin-protein ligase makorin
TrEMBLC5XZU91e-105C5XZU9_SORBI; Uncharacterized protein
STRINGSb04g029760.11e-106(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.26e-22C3H family protein