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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sof017941 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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| Family | Dof | ||||||||
| Protein Properties | Length: 166aa MW: 18507.6 Da PI: 10.9602 | ||||||||
| Description | Dof family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-Dof | 68 | 1.5e-21 | 88 | 147 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
e l+ prC+ t +k+ ny fCk+CrryWt+ GalrnvPvGgg+r+nk+++
Sof017941 88 EPGLNSPRCEYTLAKLSLIHNYYSPSRAXFCKTCRRYWTRXGALRNVPVGGGCRRNKRTK 147
567899****************999999*****************************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD007478 | 4.0E-24 | 71 | 145 | IPR003851 | Zinc finger, Dof-type |
| PROSITE profile | PS50884 | 18.687 | 91 | 145 | IPR003851 | Zinc finger, Dof-type |
| Pfam | PF02701 | 2.0E-14 | 91 | 145 | IPR003851 | Zinc finger, Dof-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 166 aa Download sequence Send to blast |
MASFQVAAPE EAEAEAAWTC MRIIIISCRR CHPLAELSWL LALTWRLWSL XSGGGGSTAG 60 GGPTGSRFTI RPGSMTERSM LAKIPTPEPG LNSPRCEYTL AKLSLIHNYY SPSRAXFCKT 120 CRRYWTRXGA LRNVPVGGGC RRNKRTKVVQ VQLLVGRLCF RTRRDX |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 140 | 147 | RRNKRTKV |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Sof.17334 | 0.0 | meristem | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009402318.1 | 5e-29 | PREDICTED: dof zinc finger protein DOF2.4-like isoform X1 | ||||
| Refseq | XP_009402319.1 | 5e-29 | PREDICTED: dof zinc finger protein DOF2.4-like isoform X2 | ||||
| Refseq | XP_028757099.1 | 3e-29 | dof zinc finger protein DOF2.4-like | ||||
| TrEMBL | A0A1D6L9X9 | 9e-30 | A0A1D6L9X9_MAIZE; Dof zinc finger protein DOF3.6 | ||||
| STRING | GRMZM2G093725_P01 | 2e-30 | (Zea mays) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G02460.1 | 2e-26 | Dof family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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