PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018057
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HB-other
Protein Properties Length: 164aa    MW: 18982.7 Da    PI: 6.8028
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-99303PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.32e-11841261355
                HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  L el +k++yps++e+  LA+++gL+++q+ +WF N+R ++
  Sof018057  84 APLVELHYKCPYPSETEKIVLAESTGLDQKQINNWFINQRKRH 126
                55788999********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.56469129IPR001356Homeobox domain
SMARTSM003893.3E-871133IPR001356Homeobox domain
SuperFamilySSF466896.42E-1579137IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-2089130IPR009057Homeodomain-like
PfamPF059209.6E-1690125IPR008422Homeobox KN domain
CDDcd000861.11E-1192130No hitNo description
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
WINFGGVLFG AAFVTDVIKR GGSSEETWIN RREDXPIEMT RERRTRSQVS AAEEYQWXLS  60
KXQARVFQEK EERKAPKGGQ PETAPLVELH YKCPYPSETE KIVLAESTGL DQKQINNWFI  120
NQRKRHWKPS EDMPFVMMEG FHPQNAAALY MDGPFMADGV YRLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-38KNOTTED-like from Arabidopsis thaliana