PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018216
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 161aa    MW: 16732.3 Da    PI: 5.1369
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-130555PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000137698123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C++C + F ++  L  H++ H
  Sof018216 76 FTCNYCQRKFFSSQALGGHQNAH 98
               89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.66E-773104No hitNo description
PROSITE profilePS5015711.32376103IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MNSKEMCQEP CDEVSEISSQ EASNSSGLVS LDLSLTVAVA AAAESSTTDN SNSNSNSGGG  60
AQADVAMAAR EPSRVFTCNY CQRKFFSSQA LGGHQNAHRR ERTLARHAPG VDTAGPYGYY  120
ADVAFLPLDG SGLYPLGIQA HPSNGTPPGS PEAPGRCPPR A
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.60870.0crown| inflorescence| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001300990.12e-75zinc finger protein 7
RefseqXP_008680366.12e-75zinc finger protein 7 isoform X1
RefseqXP_008680370.12e-75zinc finger protein 7 isoform X1
RefseqXP_023158235.12e-75zinc finger protein 7 isoform X1
TrEMBLA0A317YIC05e-74A0A317YIC0_MAIZE; Zinc finger protein 4
TrEMBLB6UI795e-74B6UI79_MAIZE; Zinc finger protein 1
STRINGGRMZM2G157197_P019e-75(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.15e-20zinc-finger protein 1