PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018224
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 161aa    MW: 16616.2 Da    PI: 9.142
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-333133730PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.4e-304108199
     DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                +C++C+vlr++C++ C+++p++     p++q++++ +++k++G++ +l+l++a+p++  r+++++sl+yeA+ r+ +PvyGavg++++++++++q+++e+
  Sof018224   4 SCNGCRVLRKGCSDACTIRPCLqwiksPDAQANATVFLAKFYGRAGLLNLIAAAPTDAlRPAVFRSLLYEACGRIVNPVYGAVGLLWSGTWHMCQAAVEA 103
                6*****************************************************99988****************************************9 PP

     DUF260  95 allke 99 
                +l ++
  Sof018224 104 VLKGA 108
                98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2663110IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-244104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCSDACT IRPCLQWIKS PDAQANATVF LAKFYGRAGL LNLIAAAPTD  60
ALRPAVFRSL LYEACGRIVN PVYGAVGLLW SGTWHMCQAA VEAVLKGAPI VQVSPDDAAG  120
PPIHAAAAAA AAAAYDIRHV FPKSSSSNKQ SAAAAAAGAP P
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.156791e-169bud| callus| crown| leaf| meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304107.18e-83uncharacterized protein LOC8066567
SwissprotQ9M8864e-69LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1B6PAI12e-81A0A1B6PAI1_SORBI; Uncharacterized protein
STRINGSb09g030780.15e-87(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-68LOB domain-containing protein 41