PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018303
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family B3
Protein Properties Length: 160aa    MW: 18649.8 Da    PI: 7.7122
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17339966PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.91.3e-11681351684
                EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
         B3  16 lvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                l + k++a +h  +k  ++ +tle+  ++++W  k+  r  s++ +l + W +Fv++n+++egD++++  
  Sof018303  68 LGITKEYAIAHFPDK--TTNVTLETpGKSKKWHPKFYKRDESRKNMLMGRWLDFVRDNHVQEGDICLLLP 135
                678999999997554..4579****5566*******668888889*********************9874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.3E-1644139IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1646148IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.54553152IPR003340B3 DNA binding domain
CDDcd100172.61E-1567147No hitNo description
PfamPF023623.7E-1068139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MASSSSEESG EDTMSENVSL EYVLAYRSYL SKAQKKRVMK LIQEIQPEFT IFISIMRWNN  60
VQPPGPFLGI TKEYAIAHFP DKTTNVTLET PGKSKKWHPK FYKRDESRKN MLMGRWLDFV  120
RDNHVQEGDI CLLLPTXDEI RYTFMIYVLH ETTHSGGXGW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.96550.0seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466813.12e-99B3 domain-containing protein Os03g0619600 isoform X3
RefseqXP_021314996.12e-98B3 domain-containing protein Os03g0619600 isoform X1
SwissprotQ6AV229e-47Y3196_ORYSJ; B3 domain-containing protein Os03g0619600
TrEMBLA0A1D6KXR65e-89A0A1D6KXR6_MAIZE; B3 domain-containing protein
STRINGSb01g014490.18e-99(Sorghum bicolor)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]