PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018391
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 158aa    MW: 16802.6 Da    PI: 9.8302
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-117668PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-0691113123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ C+k F r  nL+ H r H
  Sof018391  91 FVCEVCNKGFQREQNLQLHRRGH 113
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-589114No hitNo description
Gene3DG3DSA:3.30.160.601.4E-690113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.9E-691113IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.09491113IPR007087Zinc finger, C2H2
SMARTSM003550.004191113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MASNSSAAAV AAMFGIRDAD HQEQMKPLLA HQHQHQLPPA PLLNAAASSS AGSGQATGAS  60
LPPVKKKRNL PDPDAEVIAL SPKTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK  120
QKDPSXAQXA AVYLCPGGAC AHHEPGRALG ELTGSRST
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.84852e-76inflorescence| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105281.23e-73INDETERMINATE-related protein 10
SwissprotO227599e-46IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLA0A1E5V9G25e-75A0A1E5V9G2_9POAL; Protein indeterminate-domain 6, chloroplastic
STRINGGRMZM2G090595_P013e-75(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-46indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]