PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018626
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 154aa    MW: 17825.4 Da    PI: 10.1255
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-125830PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.4e-53101351128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                lppGfrF P+deelv++yL+kkv+++++    ++ evd++  ePw+Lp+ +k + +ewyfFs rd+kyatg+r+nratk+gyWkatgkd+ev + +g++v
  Sof018626  10 LPPGFRFYPSDEELVCHYLHKKVANERIAQ-GTLVEVDLHAREPWELPEVAKLTATEWYFFSFRDRKYATGSRTNRATKTGYWKATGKDREVRR-GGAVV 107
                79*************************998.88***************87788899*************************************9.***** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g++ktLvfy+grap+g+k+ Wvmhe+rl
  Sof018626 108 GMRKTLVFYRGRAPNGVKSGWVMHEFRL 135
                **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-607150IPR003441NAC domain
PROSITE profilePS5100556.54210154IPR003441NAC domain
PfamPF023656.1E-2911135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MALREIESTL PPGFRFYPSD EELVCHYLHK KVANERIAQG TLVEVDLHAR EPWELPEVAK  60
LTATEWYFFS FRDRKYATGS RTNRATKTGY WKATGKDREV RRGGAVVGMR KTLVFYRGRA  120
PNGVKSGWVM HEFRLDAPHS PPREDWVLCK GVQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-51515410168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452475.11e-104NAC domain-containing protein 100
RefseqXP_025822293.11e-104NAC domain-containing protein 100-like
SwissprotQ9FLJ23e-62NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3L6QK741e-103A0A3L6QK74_PANMI; Uncharacterized protein
STRINGSb04g026440.11e-103(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.16e-74NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]