PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018666
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family FAR1
Protein Properties Length: 154aa    MW: 17500.2 Da    PI: 4.5975
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17319461PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.44.5e-08120153239
       FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskeg 39 
                fYn+YA++ GFsvrk+k ++ k++    k+ f Cs+eg
  Sof018666 120 FYNKYARDKGFSVRKQKVTRAKHS----KQLFLCSREG 153
                9****************9999555....599*****99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-5120153IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
PNLPLEFWLK CGLNSGDKLQ PGLVMDNRGE DEHEEEMDFH LGTADDNSSN DENTSSNSSL  60
SSMRKEIGGD AKEMHRDGNC AYDQDIFTRI AAGAEMNNTL DEYWDIVQKT FATEGEAYIF  120
YNKYARDKGF SVRKQKVTRA KHSKQLFLCS REGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.83860.0meristem| root| stem