PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018748
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 152aa    MW: 16839.9 Da    PI: 9.3366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-2222PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.9e-1291140255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +y GVr ++ +g W+A Irdp+    +  r++lg+f + e  +  +++a++ l+g
  Sof018748  91 QYMGVRLRP-WGTWAADIRDPV----QgVRVWLGTFPSSEANRLSYDHAARDLRG 140
                599******.**********75....44**********9999999******9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.61E-1790145No hitNo description
SuperFamilySSF541713.14E-1391145IPR016177DNA-binding domain
SMARTSM003801.6E-1591150IPR001471AP2/ERF domain
PROSITE profilePS5103217.71491149IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-2191145IPR001471AP2/ERF domain
PfamPF008474.9E-692140IPR001471AP2/ERF domain
PRINTSPR003671.1E-592103IPR001471AP2/ERF domain
PRINTSPR003671.1E-5114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRGG AAWPAGKGKQ RKADDFEAAF REFDEEMMEA GEEVEVVSQP  60
AFVLRASSFL PTKPRARQEE QPSLRRKPAQ QYMGVRLRPW GTWAADIRDP VQGVRVWLGT  120
FPSSEANRLS YDHAARDLRG PKAKLSCFSS CX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1490146461ATERF1
3gcc_A6e-1490146461ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.73561e-107bud| callus| crown| leaf| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147529.22e-50ethylene-responsive element binding protein 2
TrEMBLB6STB62e-50B6STB6_MAIZE; Ethylene-responsive element binding protein 2
STRINGAC206951.3_FGP0177e-50(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-22ethylene-responsive element binding protein