PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018756
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GATA
Protein Properties Length: 152aa    MW: 16585.1 Da    PI: 9.8389
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-44433PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-1869102134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  Sof018756  69 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 102
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.71E-1561125No hitNo description
SMARTSM004013.5E-1663113IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.0556399IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.4E-1567100IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.42E-1368125No hitNo description
PfamPF003202.6E-1669103IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406994IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
XRSSGSSHSD PESIAESSPH PAPXMKKKKR AKKPAPPAPA ASSDDNDGDA DYEEGGERAE  60
PQGGAVRRCT HCQIEKTPQW RAGPLGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVPSIH  120
SNSHKKVVEM RQKAVRSGDP SCDLLQFIRR RD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12532KKKKRAKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.26271e-115crown| inflorescence| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453007.11e-102GATA transcription factor 8
RefseqXP_021314242.11e-102GATA transcription factor 8
RefseqXP_021314243.11e-102GATA transcription factor 8
TrEMBLC5XV621e-101C5XV62_SORBI; Uncharacterized protein
STRINGSb04g036520.11e-102(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.28e-40GATA family protein