PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof018838

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

MYB

Protein Properties

Length: 151aa MW: 16931.2 Da PI: 8.8745

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-72310	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.4	1.5e-17	47	94	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l Sof018838 47 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 94 79******************************************9996 PP
2	Myb_DNA-binding	42.9	1.1e-13	100	139	1	42
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 +g++T+eE+ l++++++++G++ W++ a++++ +Rt++++k+ Sof018838 100 KGAFTPEEERLIIQLHAKMGNK-WARMAAHLP-RRTDNEIKE 139 799*****************.*****.*****95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.715	42	98	IPR017930	Myb domain
SuperFamily	SSF46689	1.17E-29	44	138	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-14	46	96	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-15	47	94	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-24	48	101	IPR009057	Homeodomain-like
CDD	cd00167	1.03E-11	49	94	No hit	No description
SMART	SM00717	6.5E-10	99	147	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	15.042	99	151	IPR017930	Myb domain
Pfam	PF00249	7.0E-13	100	138	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-21	102	140	IPR009057	Homeodomain-like
CDD	cd00167	6.05E-10	102	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MYRVKSEGEG DCEMMLQDQM DSPVADDVSS GGGSPHPHRG AGPPLKKGPW TSAEDAILVD 60 YVKKHGEGNW NAVQKNTGLF RCGKSCRLRW ANHLRPNLKK GAFTPEEERL IIQLHAKMGN 120 KWARMAAHLP RRTDNEIKEL LEHSNKEMST S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-26	42	138	22	117	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269\|PubMed:9150608}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By gibberellin in aleurone cells. {ECO:0000269\|PubMed:9150608}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021313406.1	4e-98	transcription factor GAMYB
Swissprot	A2WW87	3e-82	GAM1_ORYSI; Transcription factor GAMYB
TrEMBL	A0A0C6WCK4	1e-109	A0A0C6WCK4_9POAL; ScMYB9 protein
STRING	Sb03g037680.1	6e-95	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.1	1e-57	myb domain protein 33