PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018951
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 149aa    MW: 16144.3 Da    PI: 4.825
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17233549PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM38.34.1e-122262142
        NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv 42
               lppGfrFhPtdee++++yL++k+ ++++    vi evd++k+
  Sof018951 22 LPPGFRFHPTDEEIISHYLTHKALNHRFVS-GVIGEVDLNKA 62
               79*************************888.89*****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-131562IPR003441NAC domain
PfamPF023652.3E-72356IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSEVSVINQA EVEDAGAGQL DLPPGFRFHP TDEEIISHYL THKALNHRFV SGVIGEVDLN  60
KASHGISQDE WAVCKVFNKE LAARTEPMAA AVGAELERVG SLGFLNELLD FRELPGLICA  120
YVDKGIDLKG PAFTSCHTGA SENKLPLRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.134750.0callus
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147731.15e-34uncharacterized protein LOC100281341
TrEMBLA0A3L6DHX32e-33A0A3L6DHX3_MAIZE; NAC domain-containing protein 100
STRINGGRMZM2G159500_P022e-33(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.12e-16NAC domain containing protein 100