PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof018980
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 148aa    MW: 16057.2 Da    PI: 11.2958
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-5774PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.79.8e-19231441114
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWka.....tgkd 89 
                lppGfrF+Ptdeelvv+yL++k+ g +l++  vi+ v d+y+++Pwd          +++e e yfF+ r   +  ++   rat++g  +a     tg +
  Sof018980  23 LPPGFRFRPTDEELVVQYLRRKAFGVPLPA-AVIPVVrDLYNLDPWDVVVpapapD-ASSEGEKYFFAVRPAGAG-KSGGARATANGAVEArregrTGGS 119
                79****************************.8899999**********53334332.2345599****9988765.456677777776554111113434 PP

        NAM  90 kevlskkgelvglkktLvfykgrap 114
                ++ ++++++lvg  k  +f   r++
  Sof018980 120 NPPVRRRETLVGREKAKTFVPRRKK 144
                4444446777777777777655444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-2121139IPR003441NAC domain
PROSITE profilePS5100523.25123148IPR003441NAC domain
PfamPF023652.8E-1124138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MAAERAPVLV RHAGGGLEEL RQLPPGFRFR PTDEELVVQY LRRKAFGVPL PAAVIPVVRD  60
LYNLDPWDVV VPAPAPDASS EGEKYFFAVR PAGAGKSGGA RATANGAVEA RREGRTGGSN  120
PPVRRRETLV GREKAKTFVP RRKKKASX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-132213914121Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123144RRRETLVGREKAKTFVPRRKKK
2131143REKAKTFVPRRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.137551e-126bud| leaf| meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021320646.11e-65NAC domain-containing protein 18
TrEMBLA0A1Z5RBQ72e-64A0A1Z5RBQ7_SORBI; Uncharacterized protein
STRINGGRMZM2G054252_P024e-55(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.13e-17NAC domain containing protein 41