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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sof019038 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
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| Family | LBD | ||||||||
| Protein Properties | Length: 147aa MW: 15028.6 Da PI: 6.5349 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 30 | 1.5e-09 | 2 | 42 | 57 | 97 |
DUF260 57 amsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+++sl+yeA r+ +Pv+Gavg++ ++++q +q ++e++l+
Sof019038 2 VFQSLLYEAAGRTINPVSGAVGLLGAGSWQPCQQAVETVLR 42
689********************************999876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03195 | 3.3E-5 | 2 | 39 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 147 aa Download sequence Send to blast |
XVFQSLLYEA AGRTINPVSG AVGLLGAGSW QPCQQAVETV LRGGAIGPLP EFDVGRDTFA 60 LAARRAVGCS TFSTAKRAPT TTRTNVGAPP EPSCDLGLWL SPGSPPAPGE RRRPGTPSMT 120 SEESVTTATT SGGGGGGREP ELLNLFV |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Sof.17342 | 0.0 | inflorescence| meristem| seed | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002460949.1 | 6e-82 | LOB domain-containing protein 37 | ||||
| TrEMBL | C5XD46 | 1e-80 | C5XD46_SORBI; Uncharacterized protein | ||||
| STRING | Sb02g038030.1 | 2e-81 | (Sorghum bicolor) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G49940.1 | 2e-20 | LOB domain-containing protein 38 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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