PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019074
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family Trihelix
Protein Properties Length: 146aa    MW: 15580.7 Da    PI: 9.2841
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-1786PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.61.6e-1322125186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                +W+++ +  L+ea++ ++   +r+klk  +W ++++ +                   +   ++p+qCk+k+e+++kry+++ +   +   + +  ++++f
  Sof019074  22 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAREVsvhcaddaaaagkppggGGGNSAKTPNQCKNKIESMKKRYRAESAAVARAgPAAAGPSWRFF 121
                5****************************************************988888899*****************99876666536778889**** PP

   trihelix  83 dqle 86 
                 +++
  Sof019074 122 ARMD 125
                *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.7E-1420126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MDGLPDADAA PLAAAPPQKR DEWSESGIVR LLEAYEAKWL LRNRAKLKWS DWVDIAREVS  60
VHCADDAAAA GKPPGGGGGN SAKTPNQCKN KIESMKKRYR AESAAVARAG PAAAGPSWRF  120
FARMDGLLKG PPVCSAQVQQ PELITA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.101454e-71crown| inflorescence| leaf| meristem| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653024.18e-83trihelix transcription factor ASIL1
TrEMBLA0A1D6IAL52e-81A0A1D6IAL5_MAIZE; Sequence-specific DNA binding transcription factor
TrEMBLA0A3L6E1K32e-81A0A3L6E1K3_MAIZE; Uncharacterized protein
STRINGGRMZM2G375307_P013e-82(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-24sequence-specific DNA binding transcription factors