PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019076
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 146aa    MW: 16647.3 Da    PI: 10.6069
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-2223PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.31.9e-1391126242
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeA 42 
                +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f +  eA
  Sof019076  91 QYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPY-AEA 126
                69*******.**********75....44**********.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-1490125No hitNo description
PROSITE profilePS5103216.10791131IPR001471AP2/ERF domain
SMARTSM003807.3E-891145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1791126IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-1291133IPR016177DNA-binding domain
PfamPF008477.0E-992129IPR001471AP2/ERF domain
PRINTSPR003671.9E-792103IPR001471AP2/ERF domain
PRINTSPR003671.9E-7114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MCGGAILAEL IPSAPARRGG AAWPAGKGKQ RKADDFEAAF REFDEEMMEA GEEVEVVXXP  60
AFVFRASSSL PTKPRARQEE QPSRRRKPAQ QYRGVRRRPW GKWAAEIRDP VKGVRVWLGT  120
FPYAEAWRLG YYHCRARMXL LFHGQS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.73561e-129bud| callus| crown| leaf| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147529.27e-49ethylene-responsive element binding protein 2
TrEMBLB6STB69e-49B6STB6_MAIZE; Ethylene-responsive element binding protein 2
STRINGAC206951.3_FGP0173e-48(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.16e-19ethylene-responsive element binding protein