PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019132
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bZIP
Protein Properties Length: 145aa    MW: 16104.5 Da    PI: 10.2677
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-55565PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.33.8e-142974550
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50
               +r rrk++NRe+ArrsR+RK+++++ L+  v +L+ +Nk+L   l+
  Sof019132 29 RRKRRKESNRESARRSRLRKQQQLDDLTSQVNQLKDQNKQLSMALS 74
               799**************************************96665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-122589IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.0472790IPR004827Basic-leucine zipper domain
PfamPF001702.1E-112973IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.7E-112997No hitNo description
SuperFamilySSF579593.0E-112981No hitNo description
CDDcd147021.61E-153078No hitNo description
PROSITE patternPS0003603247IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
XSGTLSGSSQ GTQSSRSEDD LDLQTQMERR KRRKESNRES ARRSRLRKQQ QLDDLTSQVN  60
QLKDQNKQLS MALSITSQNL VAVQAQNSVL QTQKMELDSR LGALTEILWY MNSSTSTSTA  120
PTNPAMVNGF TTWSSASDIL GASAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12934RKRRKE
24147RRSRLRK
34148RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.183450.0bud| root| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460009.15e-73bZIP transcription factor 44
TrEMBLA0A2R4QNQ22e-76A0A2R4QNQ2_9POAL; BZIP transcription factor
STRINGSb02g020760.12e-72(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.12e-13G-box binding factor 6