PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof019146
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB_related
Protein Properties Length: 145aa    MW: 15155.9 Da    PI: 10.4539
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-983PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-0887130243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      ++WT+   + lv+a k ++++   +W+++a+ ++ g+t  qck +
        Sof019146  87 DAWTEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 130
                      58********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-585137IPR001005SANT/Myb domain
SuperFamilySSF466894.64E-987139IPR009057Homeodomain-like
CDDcd001671.42E-788130No hitNo description
PfamPF002496.4E-788130IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-588130IPR009057Homeodomain-like
PROSITE profilePS500906.17989130IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
XILKATKSVL LQKPDSSKAF DSFLEKRKPA QSIASPLSTR DEISSSTEGA GTASSKATAQ  60
PASSQAANGK AAADPVPDGA PSVADPDAWT EAQVLALVQA LKAFPKDASQ RWERVAAAVP  120
GKTVVQCKKK VAAMRENFRS KKTGE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.65031e-108bud| callus| inflorescence| leaf| root| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304978.19e-88dnaJ homolog subfamily C member 2
TrEMBLA0A1E5VXU12e-87A0A1E5VXU1_9POAL; Uncharacterized protein
TrEMBLC5WSF72e-86C5WSF7_SORBI; Uncharacterized protein
STRINGPavir.Ga01997.1.p4e-84(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.15e-36DnaJ domain ;Myb-like DNA-binding domain