PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof019176

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

EIL

Protein Properties

Length: 144aa MW: 15829.6 Da PI: 4.4881

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-53238	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	42.3	1.8e-13	78	143	1	61
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX......XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaa.....tgakksnksneqarrkkmsraQDgiLkYMl 61 eel++rmw+d+m+lkrl+e ++++ +d a g+ + ++s+ rkkmsra DgiLk++l Sof019176 78 EELERRMWRDRMKLKRLRELQQSRGKDSMAGggglaEGSPNPKQSQKLGPRKKMSRAPDGILKFLL 143 8******************99987776667777667777789999999************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	1.9E-9	78	143	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MMGGGLMMDQ SVVFPGVHNF VDLLQQNGDK NLSFGSLMPQ TSSGDQCVMG EGDLVDPPPE 60 SFPDAGEDDS DDDVEDIEEL ERRMWRDRMK LKRLRELQQS RGKDSMAGGG GLAEGSPNPK 120 QSQKLGPRKK MSRAPDGILK FLLX

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in roots (PubMed:19798512). Expressed at low levels in leaves and panicles (PubMed:19798512). {ECO:0000269\|PubMed:19798512}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Binds directly to the DNA sequence 5'-TGTTACAAATACC-3' in the promoter of the GA20OX2 gene to activate its expression at the transcriptional level during ethylene signaling (PubMed:30002253). {ECO:0000269\|PubMed:19798512, ECO:0000269\|PubMed:30002253}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding. {ECO:0000269\|PubMed:19798512}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002467935.1	2e-71	ETHYLENE INSENSITIVE 3-like 1 protein
Refseq	XP_021317527.1	2e-71	ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q8W3M0	3e-56	EIL1B_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 1b
TrEMBL	A0A2U8KGF7	7e-71	A0A2U8KGF7_9POAL; Ethylene-insensitive-3 (Fragment)
STRING	Sb01g036740.1	8e-71	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	9e-12	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Kuroha T, et al. Ethylene-gibberellin signaling underlies adaptation of rice to periodic flooding. Science, 2018. 361(6398): p. 181-186 [PMID:30002253]